This list of sequenced fungi genomes contains all the fungal species known to have publicly available complete genome sequences that have been assembled, annotated and published; draft genomes are not included, nor are organelle only sequences.
Neurospora crassa, model eukaryote (2003)
Neurospora tetrasperma FGSC 2508 mat A, model (2010)
Aureobasidium pullulans, A. melanogenum, A. subglaciale and A. namibiae, polyextremotolerant (2014)
Hortaea werneckii, extremely halotolerant (2013)
Leptosphaeria maculans, plant pathogen (2011)
Macrophomina phaseolina, plant pathogen (2012)
Mycosphaerella fijiensis, plant pathogen (2007)
Mycosphaerella graminicola IPO323, wheat pathogen (2008)
Phaeosphaeria nodorum SN15, wheat pathogen (2005)
Pyrenophora tritici-repentis Pt-1C-BFP, wheat pathogen (2007)
Ajellomyces capsulata several strains, Darling's disease (2009, unpubl.)
Ajellomyces dermatitidis several strains (2009, unpubl.)
Arthroderma benhamiae CBS 112371, skin infection (2010, unpubl.)
Arthroderma gypseum CBS 118893, athlete's foot (2008)
Arthroderma otae CBS 113480, athlete's foot (2008)
Aspergillus aculeatus ATCC16872, industrial use (2010)
Aspergillus carbonarius ITEM 5010, food pathogen (2009)
Aspergillus clavatus Strain:NRRL1 (2008)
Aspergillus fumigatus Strain:A1163, human pathogen (2008)
Aspergillus fumigatus Strain:Af293, human pathogen (2005)
Aspergillus kawachii IFO 4308, food industry (2011)
Aspergillus nidulans Strain:FGSC A4, model organism (2005)
Aspergillus niger Strain:ATCC 1015 (DOE Joint Genome institute)
Aspergillus niger Strain:CBS 513.88, industrial use (2007)
Aspergillus oryzae Strain:RIB40, industrial use (2005)
Aspergillus terreus NIH 2624, statin producer and pathogen (2005, unpubl.)
Coccidioides immitis, human pathogen, Valley fever (2009)
Coccidioides posadasii C735 delta SOWgp, human pathogen, Valley fever (2009)
Neosartorya fischeri Strain:NRRL181 (2008)
Paracoccidioides brasiliensis, several strains, human pathogen (2007
Penicillium chrysogenum Strain: Wisconsin54-1255, industrial use (2008)
Penicillium digitatum Strain PHI26 (2012)
Penicillium digitatum Strain Pd1 (2012
Talaromyces marneffei, human pathogen (2011)
Uncinocarpus reesii (2009)
Blumeria graminis ffsp hordei Strain:DH14, plant pathogen (2010)
Botrytis cinerea (Botryotinia fuckeliana) Strain:B05.10 and T4, plant pathogen (2011)
Glarea lozoyensis (2012)
Sclerotinia sclerotiorum Strain:1980 (2011)
Ascocoryne sarcoides Strain: NRRL50072 (2012)
Tuber melanosporum Mel28, Périgord black truffle (2010)
Ashbya gossypii Strain:ATCC 10895, plant pathogen (2004)
Candida albicans Strain:WO-1, human pathogen (2009)
Candida dubliniensis CD36, human pathogen (2009)
Candida glabrata Strain:CBS138, human pathogen (2004)
Candida guilliermondii, human pathogen (2009)
Candida lusitaniae, human pathogen (2009)
Candida parapsilosis, human pathogen (2009)
Candida orthopsilosis'', human pathogen (2012)
Candida tropicalis, human pathogen (2009)
Debaryomyces hansenii Strain:CBS767, industrial use (2004)
Debaryomyces hansenii Strain:MTCC 234, salt-tolerant (2012)
Dekkera bruxellensis Strain:CBS2499, wine yeast (2012)
Hansenula polymorpha NCYC 495 leu1.1, industrial use (2010)
Kluyveromyces aestuarii ATCC 18862 (2010, unpubl.)
Kluyveromyces lactis Strain:CLIB210, industrial use (2004)
Kluyveromyces wickerhamii UCD 54-210 (2010, unpubl.)
Lachancea kluyveri (Saccharomyces kluyveri) NRRL Y-12651, plant pathogen (2009)
Lodderomyces elongisporus, human pathogen (2009)
Naumovozyma castellii Strain:AS 2.2404, CBS 4309 (Saccharomyces castellii; 2003, 2011)
Naumovozyma dairenensis Strain:CBS 421 (2011)
Saccharomyces bayanus (2003, 2011)
Saccharomyces arboricolus (2013,)
Saccharomyces cerevisiae Strain:JAY291, industrial/model (2009)
Saccharomyces cerevisiae Strain:S288C, industrial/model (1996)
Saccharomyces cerevisiae Strain:Sigma1278b, industrial/model (2010)
Saccharomyces kudriavzevii (2003)
Saccharomyces mikatae (2003, 2011)
Saccharomyces paradoxus (2003 2009)
Saccharomyces pastorianus Weihenstephan 34/70, industrial, beer (2009)
Scheffersomyces stipitis (Pichia stipitis) CBS 6054, lignin/xylose degrader (2007)
Spathaspora passalidarum NRRL Y-27907, model xylose fermenter (2010)
Tetrapisispora phaffii van der Walt Y 89, CBS 4417 (2011)
Torulaspora delbrueckii Strain:Wallerstein 129, CBS 1146 (2011)
Vanderwaltozyma polyspora DSM 70294 (2007)
Yarrowia lipolytica Strain:CLIB99, industrial use (2004)
Zygosaccharomyces rouxii strain CBS732, food spoiler (2009)
Schizosaccharomyces japonicus yFS275, model for invasive growth (2006)
Schizosaccharomyces pombe Strain:972h, model eukaryote (2002)
Colletotrichum graminicola, corn pathogen (2012)
Colletotrichum higginsianum, Arabidopsis thaliana pathogen (2012)
Chaetomium cochliodes Strain:CCM F-232, soil fungus (2016)
Chaetomium globosum Strain:CBS 148.51, soil fungus (2005)
Chaetomium thermophilum Strain:CBS 144.50, soil fungus (2011)
Fusarium oxysporum f. sp. lycopersici 4287, human/plant pathogen (2010)
Gibberella moniliformis 7600, plant pathogen (2010)
Gibberella zeae PH-1, plant pathogen (2008)
Gaeumannomyces graminis tritici R3-111a-1 (2010, unpubl.)
Grosmannia clavigera kw1407, plant pathogen (2011)
Magnaporthe grisea, plant pathogen (20054)
Metarhizium acridum CQMa 102, and
Metarhizium anisopliae ARSEF 23, insect pathogens (2011)
Nectria haematococca MPVI, plastic/pest./lignin degrader (2009)
Podospora anserina :S mat+ (2008)
Sporotrichum thermophile, thermophilic cellulose degrader (2010)
Thielavia terrestris, model thermophile/industrial (2010)
Trichoderma atroviride, industrial/soil, (2010)
Trichoderma reesei QM6a, biomass-degrading (2008)
Trichoderma virens Gv29-8, industrial/pathogen (2007)
Verticillium albo-atrum VaMs.102, plant pathogen (2008, unpubl.)
Agaricus bisporus var. bisporus Strain:H97, Champignon (2009)
Auricularia delicata (2012)
Coniophora puteana (2012)
Coprinopsis cinerea (Coprinus cinereus), model organism for multicellular fungi (2010)
Dichomitus squalens (2012)
Fibroporia radiculosa Strain:TFFH 294 (2012)
Fomitiporia mediterranea (2012)
Fomitopsis pinicola (2012)
Gloeophyllum trabeum (2012)
Hebeloma cylindrosporum http://genome.jgi.doe.gov/Hebcy2/Hebcy2.home.html
Heterobasidion annosum, plant pathogen (2009)
Laccaria bicolor Strain:S238N-H82, mycorrhiza (2008)
Moniliophthora perniciosa, Witches' Broom Disease of cacao (2008)
Phanerochaete chrysosporium Strain:RP78, mycoremediation (2004)
Piriformospora indica endophyte (2011)
Pleurotus ostreatus, industrial/lignin degrader (2010)
Postia placenta, cellulose degrader (2008)
Punctularia strigosozonata (2012)
Schizophyllum commune, mushroom (2010)
Serpula lacrymans, plant pathogen (2011)
Stereum hirsutum (2012)
Trametes versicolor (2012)
Wolfiporia cocos (2012)
Melampsora laricis-populina, pathogen of populars (2008)
Puccinia graminis f. sp. tritici, plant pathogen (2011)
Puccinia triticina 1-1 BBBD Race 1, pathogen of wheat()
Rhodotorula graminis strain WP1, plant symbiont (2010)
Sporobolomyces roseus, associated with plants ()
Cryptococcus (Filobasidiella) neoformans JEC21, human pathogen (2005, other strains unpubl.)
Dacryopinax sp. (2012)
Tremella mesenterica (2012)
Malassezia globosa CBS 7966, dandruff-associated (2007)
Malassezia restricta CBS 7877, dandruff-associated (2007)
Sporisorium rellianum, plant pathogen (2010)
Ustilago maydis, plant pathogen (2006)
Wallemia ichthyophaga, obligate halophile (2013)
Wallemia sebi, xerophile (2012)
Chytridiomycota includes fungi with spores that have flagella (zoospores) and are a sister group to more advanced land fungi that lack flagella. Several chytrid species are pathogens, but have not had their genomes sequenced yet.
Batrachochytrium dendrobatidis JEL423, amphibian pathogen (2006)
Batrachochytrium dendrobatidis JAM81, amphibian pathogen (2006)
Spizellomyces punctatus DAOM BR117 (2009)
Gonapodya prolifera JEL478 (Monoblepharidomycetes) (2011)
Chytriomyces'' sp. MP 71
Entophlycits helioformis JEL805
Gaertneriomyces semiglobifer Barr43
Globomyces pollinis-pini
Rhizoclomsatium globosum
Allomyces macrogynus ATCC 38327 (Blastocladiomycota) (2009)
Catenaria anguillulae PL171 (Blastocladiomycota)
Piromyces sp. E2 (Neocallimastigomycota) (2011)
Anaeromyces sp. S4
Neocallimastix sp. G1
Orpinomyces sp. C1A
Encephalitozoon cuniculi, human pathogen (2001)
Encephalitozoon intestinalis ATCC 50506, human pathogen (2010)
Enterocytozoon bieneusi, human pathogen particularly in the context of HIV infection (~60% of genome 2009, 2010)
Nosema ceranae, honey bee pathogen (2009)
Octosporea bayeri OER 3-3, Daphnia pathogen (2009)
Zygomycota is probably a polyphyletic group that contains basal fungal lineages.
Rhizopus oryzae, human pathogen (mucormycosis) (2009)
Mortierella alpina Strain: ATCC 32222, commercial source of arachidonic acid (2011)
