Neha Patil (Editor)

Ilastik

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Operating system
  
Any (Python based)

License
  
GPL2

Developer(s)
  
Christoph Sommer, Christoph Straehle, Thorben Kröger, Bernhard X. Kausler, Ullrich Koethe, Fred A. Hamprecht and others

Initial release
  
2011; 6 years ago (2011)

Stable release
  
1.1.7 / October 9, 2015; 16 months ago (2015-10-09)

Type
  
Image processing & Computer vision & Machine Learning

ilastik is a user-friendly free open source software for image classification and segmentation. No previous experience in image processing is required to run the software.

Contents

Features

ilastik allows user to annotate an arbitrary number of classes in images with a mouse interface. Using these user annotations and the generic (nonlinear) image features, the user can train a random forest classifier. ilastik has a CellProfiler module to use ilastik classifiers to process images within a CellProfiler framework.

History

ilastik was first released in 2011 by scientists at the Heidelberg Collaboratory for Image Processing (HCI), University of Heidelberg.

Application

  • The Interactive Learning and Segmentation Toolkit
  • Carving
  • Cell classification and neuron classification
  • Synapse detection

    • References

    Ilastik Wikipedia
    (Text) CC BY-SA