Woodyer was born in Guildford, Surrey, England, in 1816, the son of a successful, highly respected surgeon, who owned Allen House in the Upper High Street. His mother came from the wealthy Halsey family who owned Henley Park, just outside Guildford.
Woodyer was educated first at Eton College, then at Merton College, Oxford. As a result, he could claim to be one of the best educated architects since Sir Christopher Wren. Whilst at Oxford, he became involved in the Anglican high church movement and throughout his career he saw his work as an architect as a means of serving the church.
St. Blaise Church, Milton, Berkshire (now Oxfordshire), 1849–51
St Nicolas' Church, Newbury, Berkshire, 1858
St Mary's Church, Caldicot, Monmouthshire, 1859
St. Andrew's parish church, Clewer, Berkshire: north arcade, 1858
St. John the Baptist parish church, Berwick St. John, Wiltshire, 1861
St. Bartholomew's parish church, Wanborough, Surrey, 1861
St George's parish church, Evenley, Northamptonshire 1864-5
St. Lawrence parish church, Toot Baldon, Oxfordshire, 1865
St. Swithin's parish church, Compton Bassett, Wiltshire: chancel, chancel chapels and north porch (1866)
St. Laurence parish church, Caversfield, Oxfordshire, 1874
St. John the Divine parish church, Patching, West Sussex, 1888–89
Other institutional buildings
School (now the Stewart Hall), Sketty, Swansea, 1853, for John Henry Vivian
St. Edmund's Church School, Salisbury, Wiltshire, 1860
Fisherton Anger Church School, Fisherton, Salisbury, Wiltshire, 1867
House of Mercy, Clewer, Berkshire, 1853–73
Cranleigh School, Surrey 1863-65 and the Chapel 1869
New Schools, Eton College, 1861–63
St. Michael's College, Tenbury Wells, Worcestershire
The Chapel at St Thomas's Home for the Friendless and Fallen, Darlington Road, Basingstoke dedicated on 21 July 1885, the eve of St Mary Magdalen's feast day
All Saints Hospital and Chapel, Eastbourne (1867–74)
Domestic buildings
Woodyer House, Bramley, Surrey
Alterations to Parc Wern (now Parc Beck), Sketty, Glamorgan, 1851–3 for H.H. Vivian
Church Cottage, Tutshill, c. 1852.
Brynmill Lodge (gate-lodge) and (attributed) Verandah (a small Gothic house, 1853) at Singleton Abbey, Swansea) for J.H. Vivian
Alterations to Hall Place, Buckinghamshire, 1868
Alterations to Tyntesfield, Wraxall, Somerset for Matilda Blanche Gibbs, circa 1880