Puneet Varma (Editor)

VHS protein domain

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Symbol
  
VHS

Pfam clan
  
CL0009

SMART
  
VHS

Pfam
  
PF00790

InterPro
  
IPR002014

SCOP
  
1elk

VHS protein domain

In molecular biology, the VHS protein domain is approximately 140 residues long. Its name is an acronym derived from its occurrence in VPS-27, Hrs and STAM. It is a domain commonly found in the N-terminus of many proteins.

Contents

Function

VHS domains thought to be very important in vesicular trafficking, in particular, aiding membrane targeting and cargo recognition role.

Structure

Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.

Classification

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups:

  • STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs
  • Proteins with a FYVE domain (INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs
  • GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain
  • VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking.

    • References

    VHS protein domain Wikipedia
    (Text) CC BY-SA


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