This list is arranged by drainage basin, with respective tributaries indented under each larger stream's name.
Lake Superior
Pigeon River
Swamp River
Stump River
Lower Stump River
Royal River
Crocodile River
Reservation River
Flute Reed River
Brule River
Greenwood River
South Brule River
Kadunce River
Kimball Creek
Devil Track River
Little Devil Track River
Fall River
Cascade River
North Branch Cascade River
Poplar River
Tait River
Onion River
West Branch Onion River
Temperance River
Sawbill Creek
Kelso River
Vern River
Cross River
Two Island River
Caribou River
Little Manitou River
Manitou River
South Branch Manitou River
Little Marais River
Baptism River
East Branch Baptism River
West Branch Baptism River
Beaver River
East Branch Beaver River
West Branch Beaver River
Split Rock River
East Split Rock River
West Split Rock River
Gooseberry River
Skunk Creek
Little Gooseberry River
Encampment River
Stewart River
Little Stewart River
Knife River
Little Knife River, located in St. Louis County
West Branch Knife River
Little Knife River, located in Lake County
Little Sucker River
Big Sucker Creek
French River
Talmadge River
Lester River
St. Louis River
Pokegama River
Red River
Little River
Midway River
Pine River
Cloquet River
Us-kab-wan-ka River
Beaver River
Otter River
Little Cloquet River
West Branch Cloquet River
Langley River
Little Langley River
Artichoke River
Ahmik River
McCarty River
East Savanna River
Floodwood River
West Branch Floodwood River
Whiteface River
Little Whiteface River (South), located south of Meadowlands
Little Whiteface River (North), located east of Meadowlands
Paleface River
North Branch Whiteface River
South Branch Whiteface River
East Swan River
West Swan River
West Two River
East Two River
Embarrass River
Partridge River
South Branch Partridge River
East River
North River
Nemadji River
South Fork Nemadji River
Net River
Little Net River
Blackhoof River
Mississippi River
Missouri River (MO, IA)
Little Sioux River
Ocheyedan River
West Fork Little Sioux River
Big Sioux River (IA)
Rock River
Little Rock River
East Branch Rock River
Split Rock Creek
Pipestone Creek
Flandreau Creek
Des Moines River
East Fork Des Moines River
Heron Lake Outlet
Jack Creek
Diversion Creek
Okabena Creek
Lime Creek
Beaver Creek
Iowa River (IA)
Cedar River
Shell Rock River
Winnebago River (IA)
Lime Creek
Little Cedar River (Iowa and Minnesota), a tributary of the Cedar River rising in Mower County, Minnesota
Little Cedar River (Dodge County, Minnesota), a tributary of the Cedar River entirely in Dodge County
Wapsipinicon River
Upper Iowa River
Pine Creek
Little Iowa River
North Branch Upper Iowa River
Winnebago Creek
Crooked Creek
North Fork Crooked Creek
South Fork Crooked Creek
Root River
South Fork Root River
South Branch Root River
North Branch Root River
Middle Branch Root River
Pine Creek
Whitewater River
North Fork Whitewater River
Middle Fork Whitewater River
South Fork Whitewater River
Zumbro River
North Fork Zumbro River
Middle Fork Zumbro River
North Branch Middle Fork Zumbro River
South Branch Middle Fork Zumbro River
South Fork Zumbro River
Wells Creek
Hay Creek
Cannon River
North Cannon River, a distributary
Little Cannon River (Cannon River), near Cannon Falls
Straight River
Little Cannon River (Sabre Lake), near Kilkenny
Vermillion River
South Branch Vermillion River
Mississippi River
St. Croix River
Sunrise River
North Branch Sunrise River
West Branch Sunrise River
South Branch Sunrise River
Snake River
Groundhouse River
South Fork Groundhouse River
West Fork Groundhouse River
Ann River
Little Ann River
Knife River
Kettle River
Grindstone River
North Branch Grindstone River
South Branch Grindstone River
Pine River
Willow River
Little Willow River
Moose Horn River
Portage River
West Fork Moose Horn River
Split Rock River
Dead Moose River
West Branch Kettle River
Sand Creek
Lower Tamarack River
Upper Tamarack River
Mississippi River
Minnesota River
Credit River
Sand Creek
High Island Creek
Rush River
South Branch Rush River
Middle Branch Rush River
North Branch Rush River
Blue Earth River
Le Sueur River
Maple River
Cobb River
Little Cobb River
Little Le Sueur River
Watonwan River
Perch Creek
South Fork Watonwan River
North Fork Watonwan River
Elm Creek
East Branch Blue Earth River
Middle Branch Blue Earth River
West Branch Blue Earth River
Little Cottonwood River
Cottonwood River
Sleepy Eye Creek
Plum Creek
Redwood River
Hawk Creek
Yellow Medicine River
Spring Creek
North Branch Yellow Medicine River
South Branch Yellow Medicine River
Chippewa River
Shakopee Creek
East Branch Chippewa River
Little Chippewa River
Lac qui Parle River
West Branch Lac qui Parle River
Pomme de Terre River
Yellow Bank River
North Fork Yellow Bank River
South Fork Yellow Bank River
Whetstone River
Little Minnesota River
Mississippi River
Rice Creek
Rum River
West Branch Rum River
Crow River
North Fork Crow River
Middle Fork Crow River
Skunk River
South Fork Crow River
Buffalo Creek
Elk River
St. Francis River
West Branch St. Francis River
Snake River
Clearwater River
Sauk River
Ashley Creek
Watab River
North Fork Watab River
South Fork Watab River
Platte River
Skunk River
Two River
North Two River
South Two River
Little Two River
Swan River
Little Swan River
Spring Branch Swan River
Little Elk River
South Branch Little Elk River
Nokasippi River
Little Nokasippi River
Crow Wing River
Gull River
Long Prairie River
Partridge River
Little Partridge River
Leaf River
Redeye River
Wing River
Cat River
Shell River
Fish Hook River
Straight River
Portage River
Potato River
Blueberry River
Kettle River
Rabbit River
Pine River
Little Pine River
South Fork Pine River
Little Willow River
Ripple River
Rice River
Willow River
Hill River
Little Hill River
Moose River
North Fork Willow River
South Fork Willow River
Sandy River
Prairie River
Tamarack River
Little Tamarack River
West Savanna River
Swan River
Prairie River
West Fork Prairie River
Vermilion River
Deer River
Ball Club River
Leech Lake River
Bear River
Leech Lake
Boy River
Swift River
Shingobee River
Kabekona River
Necktie River
Steamboat River
First River
Pigeon River
Third River
Turtle River
North Turtle River
Gull River
Schoolcraft River
Little Mississippi River
Nelson River (Manitoba)
Lake Winnipeg (Manitoba)
Winnipeg River (Manitoba)
Lake of the Woods
Red River of the North
Red River of the North
Roseau River
Lost River
South Fork Roseau River
Joe River
Two Rivers
North Branch Two Rivers
Little Joe River
South Branch Two Rivers
Middle Branch Two Rivers
Tamarac River
Snake River
Middle River
South Branch Snake River
Grand Marais Creek
Red Lake River
Gentilly River
Black River
Little Black River
Clearwater River
Lost River
Poplar River
Hill River
Thief River
Lost River
Mud River
Moose River
Red Lake
Sandy River
Mud River
Blackduck River
North Cormorant River
South Cormorant River
Battle River
North Branch Battle River
South Branch Battle River
Tamarac River
Little Tamarac River
Lost River
Sand Hill River
Marsh River
Wild Rice River
South Branch Wild Rice River
White Earth River
Buffalo River
South Branch Buffalo River
Otter Tail River
Pelican River
Dead River
Toad River
Egg River
Bois de Sioux River
Rabbit River
South Fork Rabbit River
Mustinka River
Twelvemile Creek
West Branch Twelvemile Creek
West Fork Twelvemile Creek
East Fork Twelvemile Creek
Lake of the Woods
Warroad River
East Branch Warroad River
West Branch Warroad River
Rainy River
Winter Road River
Baudette River
West Fork Baudette River
Rapid River
East Fork Rapid River
Barton Brook
Wing River
North Branch Rapid River
Black River
West Fork Black River
South Fork Black River
Big Fork River
Bear River
Sturgeon River
Rice River
Popple River
Dunbar River
Bowstring River
Turtle River
Little Fork River
Beaver Brook
Cross River
Deer River
Ester Brook
Nett Lake River
Lost River
Rapid River
Valley River
Willow River
Sturgeon River
Bear River
Bearskin River
Dark River
East Branch Sturgeon River
Shannon River
Rice River
Rainy Lake/Kabetogama Lake/Namakan Lake/Crane Lake
Rat Root River
East Branch Rat Root River
Ash River
Black Duck River
Moose River
Johnson River
Vermilion River
Pelican River
Elbow River
Vermilion Lake
Armstrong River
East Two River
West Two River
Pike River
Sand River
Echo River
Hunting Shack River
Loon River
Little Indian Sioux River
Little Pony River
Korb River
Namakan River (Ontario)
Lac la Croix/Crooked Lake
Hustler River
Boulder River
Dahlgren River
Stuart River
Nina Moose River
Oyster River
Moose River
Portage River
Bottle River
Beartrap River
Basswood River
Horse River
Basswood Lake/Fall Lake
Range River
Shagawa River
Burntside River
Dead River
Bear Island River
Beaver River
Kawishiwi River
South Kawishiwi River
Birch Lake
Keeley Creek
Birch River
Isabella River
Little Isabella River
Island River
Dumbbell River
Perent River
Snake River
Stony River
Sand River
Greenwood River
Dunka River
Little Saganaga Lake/Gillis Lake
Frost River
Chub River
Louse River
Phoebe River
Knife River
Knife Lake
Maligne River (Ontario)
Saganaga Lake
Sea Gull River
Granite River
Pine River
Cross River
Tucker River
Long Island River
