Interval tree

Naive approach

In a simple case, the intervals do not overlap and they can be inserted into a simple binary search tree and queried in O(log n) time. However, with arbitrarily overlapping intervals, there is no way to compare two intervals for insertion into the tree since orderings sorted by the beginning points or the ending points may be different. A naive approach might be to build two parallel trees, one ordered by the beginning point, and one ordered by the ending point of each interval. This allows discarding half of each tree in O(log n) time, but the results must be merged, requiring O(n) time. This gives us queries in O(n + log n) = O(n), which is no better than brute-force.

Interval trees solve this problem. This article describes two alternative designs for an interval tree, dubbed the centered interval tree and the augmented tree.

Centered interval tree

Queries require O(log n + m) time, with n being the total number of intervals and m being the number of reported results. Construction requires O(n log n) time, and storage requires O(n) space.

Construction

Given a set of n intervals on the number line, we want to construct a data structure so that we can efficiently retrieve all intervals overlapping another interval or point.

We start by taking the entire range of all the intervals and dividing it in half at x_center (in practice, x_center should be picked to keep the tree relatively balanced). This gives three sets of intervals, those completely to the left of x_center which we'll call S_left, those completely to the right of x_center which we'll call S_right, and those overlapping x_center which we'll call S_center.

The intervals in S_left and S_right are recursively divided in the same manner until there are no intervals left.

The intervals in S_center that overlap the center point are stored in a separate data structure linked to the node in the interval tree. This data structure consists of two lists, one containing all the intervals sorted by their beginning points, and another containing all the intervals sorted by their ending points.

The result is a ternary tree with each node storing:

A center point

A pointer to another node containing all intervals completely to the left of the center point

A pointer to another node containing all intervals completely to the right of the center point

All intervals overlapping the center point sorted by their beginning point

All intervals overlapping the center point sorted by their ending point

Intersecting

Given the data structure constructed above, we receive queries consisting of ranges or points, and return all the ranges in the original set overlapping this input.

With a point

The task is to find all intervals in the tree that overlap a given point x. The tree is walked with a similar recursive algorithm as would be used to traverse a traditional binary tree, but with extra affordance for the intervals overlapping the "center" point at each node.

For each tree node, x is compared to x_center, the midpoint used in node construction above. If x is less than x_center, the leftmost set of intervals, S_left, is considered. If x is greater than x_center, the rightmost set of intervals, S_right, is considered.

As each node is processed as we traverse the tree from the root to a leaf, the ranges in its S_center are processed. If x is less than x_center, we know that all intervals in S_center end after x, or they could not also overlap x_center. Therefore, we need only find those intervals in S_center that begin before x. We can consult the lists of S_center that have already been constructed. Since we only care about the interval beginnings in this scenario, we can consult the list sorted by beginnings. Suppose we find the closest number no greater than x in this list. All ranges from the beginning of the list to that found point overlap x because they begin before x and end after x (as we know because they overlap x_center which is larger than x). Thus, we can simply start enumerating intervals in the list until the startpoint value exceeds x.

Likewise, if x is greater than x_center, we know that all intervals in S_center must begin before x, so we find those intervals that end after x using the list sorted by interval endings.

If x exactly matches x_center, all intervals in S_center can be added to the results without further processing and tree traversal can be stopped.

With an interval

For a result interval r to intersect our query interval q one of the following must hold:

the start and/or end point of r is in q; or

r completely encloses q.

We first find all intervals with start and/or end points inside q using a separately-constructed tree. In the one-dimensional case, we can use a search tree containing all the start and end points in the interval set, each with a pointer to its corresponding interval. A binary search in O(log n) time for the start and end of q reveals the minimum and maximum points to consider. Each point within this range references an interval that overlaps q and is added to the result list. Care must be taken to avoid duplicates, since an interval might both begin and end within q. This can be done using a binary flag on each interval to mark whether or not it has been added to the result set.

Finally, we must find intervals that enclose q. To find these, we pick any point inside q and use the algorithm above to find all intervals intersecting that point (again, being careful to remove duplicates).

Higher dimensions

The interval tree data structure can be generalized to a higher dimension N with identical query and construction time and O(n log n) space.

First, a range tree in N dimensions is constructed that allows efficient retrieval of all intervals with beginning and end points inside the query region R. Once the corresponding ranges are found, the only thing that is left are those ranges that enclose the region in some dimension. To find these overlaps, N interval trees are created, and one axis intersecting R is queried for each. For example, in two dimensions, the bottom of the square R (or any other horizontal line intersecting R) would be queried against the interval tree constructed for the horizontal axis. Likewise, the left (or any other vertical line intersecting R) would be queried against the interval tree constructed on the vertical axis.

Each interval tree also needs an addition for higher dimensions. At each node we traverse in the tree, x is compared with S_center to find overlaps. Instead of two sorted lists of points as was used in the one-dimensional case, a range tree is constructed. This allows efficient retrieval of all points in S_center that overlap region R.

Deletion

If after deleting an interval from the tree, the node containing that interval contains no more intervals, that node may be deleted from the tree. This is more complex than a normal binary tree deletion operation.

An interval may overlap the center point of several nodes in the tree. Since each node stores the intervals that overlap it, with all intervals completely to the left of its center point in the left subtree, similarly for the right subtree, it follows that each interval is stored in the node closest to the root from the set of nodes whose center point it overlaps.

Normal deletion operations in a binary tree (for the case where the node being deleted has two children) involve promoting a node further from the leaf to the position of the node being deleted (usually the leftmost child of the right subtree, or the rightmost child of the left subtree).

As a result of this promotion, some nodes that were above the promoted node will become its descendants; it is necessary to search these nodes for intervals that also overlap the promoted node, and move those intervals into the promoted node. As a consequence, this may result in new empty nodes, which must be deleted, following the same algorithm again.

Balancing

The same issues that affect deletion also affect rotation operations; rotation must preserve the invariant that nodes are stored as close to the root as possible.

Augmented tree

Another way to represent intervals is described in Cormen et al. (2009, Section 14.3: Interval trees, pp. 348–354).

Both insertion and deletion require O(log n) time, with n being the total number of intervals in the tree prior to the insertion or deletion operation.

An augmented tree can be built from a simple ordered tree, for example a binary search tree or self-balancing binary search tree, ordered by the 'low' values of the intervals. An extra annotation is then added to every node, recording the maximum upper value among all the intervals from this node down. Maintaining this attribute involves updating all ancestors of the node from the bottom up whenever a node is added or deleted. This takes only O(h) steps per node addition or removal, where h is the height of the node added or removed in the tree. If there are any tree rotations during insertion and deletion, the affected nodes may need updating as well.

Now, it is known that two intervals A and B overlap only when both A.low ≤ B.high and A.high ≥ B.low. When searching the trees for nodes overlapping with a given interval, you can immediately skip:

all nodes to the right of nodes whose low value is past the end of the given interval.

all nodes that have their maximum 'high' value below the start of the given interval.

Membership queries

Some performance may be gained if the tree avoids unnecessary traversals. These can occur when adding intervals that already exist or removing intervals that don't exist.

A total order can be defined on the intervals by ordering them first by their lower bounds and then by their upper bounds. Then, a membership check can be performed in O(log n) time, versus the O(k + log n) time required to find duplicates if k intervals overlap the interval to be inserted or removed. This solution has the advantage of not requiring any additional structures. The change is strictly algorithmic. The disadvantage is that membership queries take O(log n) time.

Alternately, at the rate of O(n) memory, constant-time membership queries can be implemented with a hash table, updated in lockstep with the interval tree. This may not necessarily double the total memory requirement, if the intervals are stored by reference rather than by value.

Java example: Adding a new interval to the tree

The key of each node is the interval itself, hence nodes are ordered first by low value and finally by high value, and the value of each node is the end point of the interval:

Java example: Searching a point or an interval in the tree

To search for an interval, one walks the tree, using the key (n.getKey()) and high value (n.getValue()) to omit any branches that cannot overlap the query. The simplest case is a point query:

where

a.compareTo(b) returns a negative value if a < b a.compareTo(b) returns zero if a = b a.compareTo(b) returns a positive value if a > b

The code to search for an interval is similar, except for the check in the middle:

overlapsWith() is defined as:

Higher dimensions

Augmented trees can be extended to higher dimensions by cycling through the dimensions at each level of the tree. For example, for two dimensions, the odd levels of the tree might contain ranges for the x-coordinate, while the even levels contain ranges for the y-coordinate. This approach effectively converts the data structure from an augmented binary tree to an augmented kd-tree, thus significantly complicating the balancing algorithms for insertions and deletions.

A simpler solution is to use nested interval trees. First, create a tree using the ranges for the y-coordinate. Now, for each node in the tree, add another interval tree on the x-ranges, for all elements whose y-range is the same as that node's y-range.

The advantage of this solution is that it can be extended to an arbitrary number of dimensions using the same code base.

At first, the additional cost of the nested trees might seem prohibitive, but this is usually not so. As with the non-nested solution earlier, one node is needed per x-coordinate, yielding the same number of nodes for both solutions. The only additional overhead is that of the nested tree structures, one per vertical interval. This structure is usually of negligible size, consisting only of a pointer to the root node, and possibly the number of nodes and the depth of the tree.

Medial- or length-oriented tree

A medial- or length-oriented tree is similar to an augmented tree, but symmetrical, with the binary search tree ordered by the medial points of the intervals. There is a maximum-oriented binary heap in every node, ordered by the length of the interval (or half of the length). Also we store the minimum and maximum possible value of the subtree in each node (thus the symmetry).

Overlap test

Using only start and end values of two intervals ( a i , b i ) , for i = 0 , 1 , the overlap test can be performed as follows:

a 0 ⩽ a 1 < b 0    OR    a 0 < b 1 ⩽ b 0    OR    a 1 ⩽ a 0 < b 1    OR    a 1 < b 0 ⩽ b 1

This can be simplified using the sum and difference:

s i = a i + b i

d i = b i − a i

Which reduces the overlap test to:

| s 1 − s 0 | < d 0 + d 1

Adding interval

Adding new intervals to the tree is the same as for a binary search tree using the medial value as the key. We push d i onto the binary heap associated with the node, and update the minimum and maximum possible values associated with all higher nodes.

Searching for all overlapping intervals

Let's use a q , b q , m q , d q for the query interval, and M n for the key of a node (compared to m i of intervals)

Starting with root node, in each node, first we check if it is possible that our query interval overlaps with the node subtree using minimum and maximum values of node (if it is not, we don't continue for this node).

Then we calculate min { d i } for intervals inside this node (not its children) to overlap with query interval (knowing m i = M n ):

min { d i } = | m q − M n | − d q

and perform a query on its binary heap for the d i 's bigger than min { d i }

Then we pass through both left and right children of the node, doing the same thing. In the worst-case, we have to scan all nodes of the binary search tree, but since binary heap query is optimum, this is acceptable (a 2- dimensional problem can not be optimum in both dimensions)

This algorithm is expected to be faster than a traditional interval tree (augmented tree) for search operations. Adding elements is a little slower in practice, though the order of growth is the same.