Research center Sun Yat-sen University Primary citation Yang & al. (2011) | Authors Release date 2010 | |
Description microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data. Laboratory Key Laboratory of Gene Engineering of the Ministry of Education | ||
StarBase is a database for decoding miRNA-mRNA, miRNA-lncRNA, miRNA-sncRNA, miRNA-circRNA, miRNA-pseudogene, protein-lncRNA, protein-ncRNA, protein-mRNA interactions and ceRNA networks from CLIP-Seq (HITS-CLIP, PAR-CLIP, iCLIP, CLASH) and degradome sequencing data. starBase provides miRFunction and ceRNAFunction web tools to predict the function of ncRNAs (miRNAs, lncRNAs, pseudogenes) and protein-coding genes from the miRNA and ceRNA regulatory networks.
starBase also deverloped Pan-Cancer Analysis Platform to decipher Pan-Cancer Analysis Networks of lncRNAs, miRNAs, ceRNAs and RNA-binding proteins (RBPs) by mining clinical and expression profiles of 14 cancer types (>6000 samples) from The Cancer Genome Atlas (TCGA) Data Portal.
References
StarBase (database) Wikipedia(Text) CC BY-SA