Symbol P-II Pfam clan CL0089 SMART SM00938 | Pfam PF00543 InterPro IPR002187 PROSITE PDOC00439 | |
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The Nitrogen regulatory protein P-II family contains a series of homologous prokaryotic signalling proteins which are involved in the regulation of nitrogen metabolism. The proteins are post translationally modified via addition of a uridylyl group by the enzyme Uridylyltransferase. The presence or absence of this group modulates the behaviour of the protein. In turn, uridylation is controlled by cellular levels of alpha=ketoglutarate and ATP.
PII proteins exist in trimers in vivo and bind ATP in a cleft between the subunits. There are two flexible loops call the B-loop and T-loop which are involved in regulation of the protein. The T-loop contains a conserved tyrosine which is the site of uridyl attachment.
Following nitrogen starvation, increased intra-cellular concentrations of ammonia cause the de-uridylylation of GlnK. This then binds directly to the ammonia channel AmtB to block ammonia conduction.