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Lysine 2,3 aminomutase

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EC number
  
5.4.3.2

IntEnz
  
IntEnz view

ExPASy
  
NiceZyme view

CAS number
  
9075-20-1

BRENDA
  
BRENDA entry

KEGG
  
KEGG entry

Lysine 2,3-aminomutase

Lysine 2,3-aminomutase (KAM or LAM) (EC 5.4.3.2) is a radical SAM enzyme that facilitates the conversion of the amino acid lysine to beta-lysine. It accomplishes this interconversion using three cofactors and a 5'-deoxyadenosyl radical formed in a S-Adenosyl methionine (SAM) activated radical reaction pathway.[1] The generalized reaction is shown below:

Contents

Structure

Shown on the right is the three-dimensional structure of the Lysine 2,3-aminomutase protein. The structure was determined by X-ray crystallography to 2.1 Angstrom resolution and was seen to crystallize as a homotetramer.[2] KAM was first purified and characterized in Clostridium subterminale for studies of Lysine metabolism.

Cofactors

Three key cofactors are required for the reaction catalyzed by the lysine 2,3-aminomutase enzyme. They are:

  • Pyridoxal phosphate (PLP): Responsible for binding of the amino acid during reaction. The pi-system of this molecule facilitates radical delocalization during formation of an aziridinyl radical. The structure is given below:
  • Zinc metal: Required for coordination between the dimers in the protein.
  • Iron-sulfur cluster: A 4 iron-4 sulfur cluster is required for formation of a 5'-deoxyadenosyl radical. This radical then acts as the "stable" radical carrier in the reaction mechanism which transfers the radical to the amino acid.

    • Reaction Mechanism

    The generalized reaction takes place in 5 steps:

    1. Radical Formation: A "stable" radical is formed through a radical SAM mechanism in which a S-adenosyl methionine forms a 5'-deoxyadenosyl radical.
    2. Enzyme Binding: Lysine 2,3-aminomutase binds to pyridoxal phosphate (PLP).
    3. Amino Acid Binding: The amino acid (Lysine or Beta-Lysine depending on forward or reverse reactions) binds to pyridoxal phosphate.
    4. Radical Transfer: The 5'-deoxyadenosyl radical is transferred to the amino acid and an aziridinyl radical is formed. In this configuration, the radical is stabilized by the pi-system of pyridoxal phosphate.
    5. Amino Acid Conversion: In the final step, the new amino acid is formed and the radical is returned to its more stable state on the 5'-deoxyadenosyl.

    The reaction mechanism described above is shown below:

    References

    Lysine 2,3-aminomutase Wikipedia
    (Text) CC BY-SA