Fujimoto (藤本, 藤元) is a Japanese surname. Notable people with the surname include:
Atsushi Fujimoto, professional baseball player
Hideo Fujimoto, baseball pitcher
George I. Fujimoto, American chemist
James Fujimoto, a Japanese-American researcher at MIT
Jungo Fujimoto, Japanese football player
Kenji Fujimoto, purported former sushi chef to Kim Jong Il
Masashi Fujimoto, Japanese actor and entertainer
Matsuo Fujimoto, a Japanese convict
Miki Fujimoto, Japanese musician
Noriaki Fujimoto (藤本 憲明, born 1989), Japanese footballer
Shihachi Fujimoto, Japanese photographer
Shun Fujimoto, Japanese gymnast
Sou Fujimoto, Japanese architect
Tak Fujimoto, Japanese cinematographer
Takahiro Fujimoto, Japanese medley swimmer
Tsukasa Fujimoto, Japanese professional wrestler and actress
Fictional characters:
Fujimoto, character in the film Ponyo on the Cliff by the Sea
Abby Fujimoto, character in the television series Flight 29 Down
Kiyokazu Fujimoto, protagonist of the manga series Kobato
Fujimoto, antagonist of the games "Octodad" and "Octodad: Dadliest Catch"