Babenko is a surname. Notable people with the name include:
Dmitry Babenko (born 1985), Kazakhstani speed skater
Alexandr Babenko, ski-orienteering competitor from Kazakhstan
Aleksei Babenko (born 1972), Russian footballer
Yuri Babenko (born 1978), Russian ice hockey player
Sergei Babenko (born 1996), Russian football player
Ruslan Babenko (born 1992), Ukrainian football midfielder
Dmytro Babenko (born 1978), Ukrainian footballer
Valery Babenko (born 1964), People's Deputy of Ukraine since November 2007