Stable release 2.0 Type Bioinformatics tool Website AMAP download | Operating system Licence Open source | |
Developer(s) Ariel Schwartz (UC Berkeley), Lior Pachter (UC Berkeley) | ||
AMAP is a multiple sequence alignment program based on a new approach to multiple alignment called sequence annealing. This approach consists of building up the multiple alignment one match at a time, thereby circumventing many of the problems of progressive alignment. The AMAP parameters can be used to tune the sensivitiy-specificity tradeoff.
The program can be used through the AMAP web server or as a standalone program which can be installed with the source code.
Input/Output
This program accepts sequences in FASTA format.
The output format includes: FASTA format, Clustal.
References
AMAP Wikipedia(Text) CC BY-SA