| 6–3, 6–1|
| Lukáš Dlouhý
2006 Estoril Open – Men's Doubles Wikipedia
František Čermák and Leoš Friedl were the defending champions. Čermák did not participate this year. Friedl partnered Lucas Arnold, finishing runner-up.
Lukáš Dlouhý and Pavel Vízner won in the final 6–3, 6–1, against Lucas Arnold and Leoš Friedl.