| 6–1, 7–6|
| Irakli Labadze
1999 French Open – Boys' Doubles Wikipedia
José de Armas and Fernando González were the defending champions, but only de Armas competed this year with Daniel Langre. They lost in the quarterfinals to Irakli Labadze and Lovro Zovko.
Labadze and Zovko ended up winning the title, defeating Kristian Pless and Olivier Rochus in the final, 6–1, 7–6.